Create Example TapestriExperiment — newTapestriExperimentExample • karyotapR

Creates a TapestriExperiment object for demonstration purposes, which includes 240 probes across the genome, and 300 cells of 3 types. Raw counts are generated randomly. Type 1 has 75 cells, all XY, all diploid. Type 2 has 100 cells, all XX, with 3 copies of chr 7, otherwise diploid. Type 3 has 125 cells, all XY, with 1 copy of chr 1p, otherwise diploid.

Usage

newTapestriExperimentExample()

Value

TapestriExperiment object with demo data.

Examples

tapExperiment <- newTapestriExperimentExample()
#> ℹ Moving gRNA probe  to `altExp` slot "grnaCounts".
#> ℹ Moving barcode probe  to `altExp` slot "barcodeCounts".
#> ℹ Moving chrY probe(s) probe_231, probe_232, probe_233, probe_234, probe_235, probe_236, probe_237, probe_238, probe_239, and probe_240 to `altExp` slot "chrYCounts".