Hi, my name is

Joey.

I'm a graduating PhD candidate at the NYU School of Medicine.

I develop methods for detecting aneuploidy in cells and create tools to make my labmates’ lives easier.

Projects

karyotapR
karyotapR
R package for genome wide DNA copy number/aneuploidy analysis with custom targeted sequencing panels.
KaryoCreate
KaryoCreate
A new CRISPR-based technology to generate chromosome-specific aneuploidy by targeting human centromeres.
GetChromosomes
GetChromosomes
R Shiny app for quick chromosome and cytoband annotation for genes.
NGS Pooling Calculator
NGS Pooling Calculator
R Shiny calculator for Illumina Next Gen Sequencing library pooling.
QuantIT Calculator
QuantIT Calculator
R Shiny calculator for QuantIT dsDNA quanitification kits.

Publications

Sept 2023
KaryoTap enables aneuploidy detection in thousands of single human cells
Joseph C Mays, Sally Mei, Nazario Bosco, Xin Zhao, Joy J Bianchi, … Teresa Davoli
bioRxiv
April 2023
KaryoCreate: A CRISPR-based technology to study chromosome-specific aneuploidy by targeting human centromeres
Nazario Bosco*, Aleah Goldberg*, Xin Zhao*, Joseph C. Mays*, Pan Cheng*, Adam F Johnson*, … Teresa Davoli
*equal contribution
Cell
  
PubMed
Oct 2018
Single-cell RNA sequencing of the mammalian pineal gland identifies two pinealocyte subtypes and cell type-specific daily patterns of gene expression.
Joseph C. Mays, Michael C. Kelly, … Matthew W. Kelley, David C. Klein
PLOS One
  
PubMed
Sept 2022
Proteogenomic analysis of cancer aneuploidy and normal tissues reveals divergent modes of gene regulation across cellular pathways
Pan Cheng, Xin Zhao, … Joseph C. Mays, … Teresa Davoli
eLife
  
PubMed
Dec 2020
Characterization of the development of the mouse cochlear epithelium at the single cell level
Likhitha Kolla, Michael C. Kelly, … Joseph C. Mays, … Matthew W. Kelley
Nature Communications
  
PubMed
April 2020
Not all cancers are created equal: Tissue specificity in cancer genes and pathways
Joy J. Bianchi, Xin Zhao, Joseph C. Mays, Teresa Davoli
Current Opinion in Cell Biology
  
PubMed
Sept 2020
Single Cell Sequencing of the Pineal Gland: The Next Chapter
Steven L. Coon, … Joseph C. Mays, Michael C. Kelly, Matthew W. Kelley, … David C. Klien
Frontiers in Endocrinology
  
PubMed